rs47001851 SNP Detail

Summary

• ID
  rs47001851
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40580403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGACTTG AACAATCATA
  ACTTCCTTAA AATTAAACAA CACATACAAC TCAGAGAGAA AACACCTTTG AAAGAATGGC
  TTCCCGATAC CCAGAAACGG CTGTCCAGGA ACCTTGTCTC TGGAGGTTAG CATTAATCCA
  CGTGTTAGAT CATGTGAACA GTCCATAGCC ATTTACTTCC AGGCTGGTGT TTCTTGCTAA
  Y
  ATTTACATCA TTCAGTTGAT TTGTTTTACC CTGTGAAGAA AGGGTTTGGT TTTCATCAGT
  TGAAATACTG TGGGGTTTTG GTTTTGGTTT TGGTTTTGGT TTTGGTTTTG GTTTTGGTTT
  TGGTTTTGGT TTTGGTTTTG GTTTTGGTTT TGGTTTTGGC TTTGGCTTTG GTTTTGGCTT
  TGGCTTTGGC TTTGGCTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60393117	NES15896581	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47001851					SNP	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393117	NES15896581	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40580403 () rs orientation: forward

Symbol	Name	Function Class
Rr575829	regulatory region 575829	608 bp distal
Rr575830	regulatory region 575830	694 bp distal
Rr575831	regulatory region 575831	962 bp proximal
Rr575832	regulatory region 575832	1626 bp proximal