rs47002530 SNP Detail

Summary

• ID
  rs47002530
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137667547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGAATAT TATTTAACAA
  ATGACAATTC TTTTTGAAGG TAAATATAGC AATGTGTTAG CATCACCATA AATAAGCCTT
  TGACGATGCG GAACACACAG CCATCAAAAT CGCCAAGCAC TTTAGAGGCT GTCACGTGTG
  TCTTCTGTCA GGGAATACTC TCAGGTTTTC ACTCTACTTG AAGACATGAG ACAGTTCCCC
  Y
  GCCTTCTCTT CCACTGACGG CAAAGGTTCT TGAATATTAA CGTCCATAAA GGCCATGAAT
  TCAGAGACAG AGGTGACAGG CAGGACGTGT GTGTCCTTGG CCTTCCTCCC TAGTCTGGGA
  ATCAGTCAGA AGCCTGCTTC TGTCGGTGAG TCACATGACC CTAGTCTTCT CCCTTGCCTG
  CCTGCATGAT TATCTACGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135945629	ENSMUSSNP4014112	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320977298	CHEV_3_137624750	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47002530					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137667547 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dapp1	dual adaptor for phosphotyrosine and 3-phosphoinositides 1			Intron
				Noncoding-Transcript-Variant
Rr586037	regulatory region 586037			63 bp proximal
Rr586038	regulatory region 586038			1695 bp proximal