rs47003459 SNP Detail

Summary

• ID
  rs47003459
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:73956519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT CTTATACGCT GATTTTTTTT
  W
  AATTTAAATC AAAAGTAGTT TCATA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137890832	ENSMUSSNP4777759	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss324099237	CHEV_12_75010732	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47003459					SNP	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73956519 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4761	CpG island 4761	731 bp distal
Gm20235	predicted gene, 20235	810 bp upstream
Hif1a	hypoxia inducible factor 1, alpha subunit	Intron
Rr467871	regulatory region 467871	1831 bp distal
Rr467872	regulatory region 467872	251 bp distal
Rr467873	regulatory region 467873	1754 bp distal
Rr467874	regulatory region 467874	510 bp distal
Tssr113838	transcription start site region 113838	1775 bp downstream
Tssr113839	transcription start site region 113839	1730 bp downstream
Tssr113840	transcription start site region 113840	1679 bp downstream
Tssr113841	transcription start site region 113841	1575 bp downstream
Tssr113842	transcription start site region 113842	1509 bp downstream
Tssr113843	transcription start site region 113843	1364 bp downstream
Tssr113844	transcription start site region 113844	125 bp downstream
Tssr113845	transcription start site region 113845	340 bp upstream