rs47003520 SNP Detail

Summary

• ID
  rs47003520
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16455561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGGGTAA GCAGTTTTGG
  AGGAGGAGAG TTGTCTGAGG GGCCCAGGTG GTCAGGACTC ACTTCCTGAT CGAGTGGTTG
  TTCCCAGGTG CAAAAGGGGG AGAGAAATGC AGAACTTCAG AAATAGGGCA AATGGCAGCC
  ATTCAGGCTA TGGAGACCCA ATAAAGTAAA AATGCTGGGA CTAAAATTGA GTTTGGGAGG
  R
  AGGCAGAAGA AGATGAAATC CATTCATGAC TTTTCTTAAT ATTGGAAGGT CTTCGACCAT
  TATTTATAAC ATAAGAATTT CTGAATGCAT TATTACAAAA AAAAAAAAAA AAAAAAAAAC
  CTTAAAGAAT GAATGGGTTT AGAGACAGTT GGGGTGGGGG AGGGAAAAGA AGAAGGGACA
  GACCTCCAGC AAGAAGAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148394912	ENSMUSSNP3608451	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47003520					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16455561 () rs orientation: forward

Symbol	Name	Function Class
Ceacam9	CEA cell adhesion molecule 9	293 bp upstream
Gm5586	predicted gene 5586	1726 bp upstream
Tssr64618	transcription start site region 64618	318 bp upstream
Tssr70767	transcription start site region 70767	1696 bp upstream