rs47004200 SNP Detail

Summary

• ID
  rs47004200
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164285802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTT CAAGCTGTAG CTGCACCACT
  T
  TGCTTGCTGT GACCTCTGGC GAGAT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145978926	ENSMUSSNP5219698	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs47004200					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164285802 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Cpgi945	CpG island 945	within coordinates
Gm32391	predicted gene, 32391	290 bp upstream
Gm70485	predicted gene, 70485	1378 bp downstream
Gm70492	predicted gene, 70492	240 bp downstream
Rr422210	regulatory region 422210	1624 bp distal
Rr422212	regulatory region 422212	123 bp distal
Rr422213	regulatory region 422213	within coordinates
Rr422214	regulatory region 422214	6 bp proximal
Rr422215	regulatory region 422215	112 bp proximal
Rr422216	regulatory region 422216	170 bp proximal
Rr422217	regulatory region 422217	283 bp proximal
Rr422218	regulatory region 422218	503 bp proximal
Tssr9788	transcription start site region 9788	284 bp upstream
Tssr9789	transcription start site region 9789	303 bp upstream
Tssr14746	transcription start site region 14746	221 bp upstream
Tssr14747	transcription start site region 14747	112 bp downstream
Tssr14748	transcription start site region 14748	492 bp downstream