rs47004501 SNP Detail

Summary

• ID
  rs47004501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:149211011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAACGAAGGC TGCCACCAAA CCTCTGCGCG CTCTGCGCTT
  GGCAGAGGCC TCGTCCCTTG CTATTGGCGT GTAAGCACCC GCCGGGCGGC AGGTCTGCTT
  Y
  GGATCGGGCT TTTGTTCGGC CCCCTGGGCT CGGGGCTGGG TTTTCGCCAC CTCTGTCCCG
  GCGGAGGGGC GCCGCCCGGG TCCTCGCTGT ACCGCGGGGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss60961294	NES16169786	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs47004501					SNP	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60961294	NES16169786	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:149211011 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18192	CpG island 18192	within coordinates
Gm56997	predicted gene, 56997	within coordinates
Resf1	retroelement silencing factor 1	within coordinates
Rr380294	regulatory region 380294	within coordinates
Rr380295	regulatory region 380295	1977 bp upstream
Rr641718	regulatory region 641718	1270 bp distal
Rr641719	regulatory region 641719	29 bp distal
Rr641720	regulatory region 641720	171 bp distal
Rr641721	regulatory region 641721	122 bp distal
Rr641722	regulatory region 641722	within coordinates
Rr641723	regulatory region 641723	152 bp proximal
Rr641724	regulatory region 641724	1110 bp proximal
Tssr59650	transcription start site region 59650	195 bp downstream
Tssr59651	transcription start site region 59651	75 bp downstream
Tssr59652	transcription start site region 59652	31 bp downstream
Tssr59653	transcription start site region 59653	32 bp upstream
Tssr59654	transcription start site region 59654	220 bp upstream
Tssr59655	transcription start site region 59655	269 bp upstream
Tssr59656	transcription start site region 59656	815 bp upstream
Tssr64178	transcription start site region 64178	1716 bp upstream
Tssr64179	transcription start site region 64179	120 bp downstream
Tssr64180	transcription start site region 64180	143 bp downstream