rs47005020 SNP Detail

Summary

• ID
  rs47005020
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148795406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGTTTCG TTTTTCCAGG
  TCTTGGGGGC AGAAGCTAGG GGCATTCCTA TTCTAGAAGC GTGTATGTTC GCTCTACGTA
  AGCGCTCAGC CACCGTGTTA CACTCTCATC CTTTCTTACA GGTACATTTT AAAGAAGGAA
  ACAACTTACT TAGCACCCTA CAGAGAGACA GCAGGCAGAG AAGTAGCAGA TGAGCCACCA
  S
  TCTTTGTTAC ACTTTTGAGA CCCGGCCACC CTAAGCATCC AGGCTGGTTT TGAACTTGAG
  TCTGTCTGTA CCCTAGGCAG GTTTTGAACT TGTGATTCTA GGAATCCAGG TTTCCAGATA
  ACTAGAACTG CATTCCTGCC CAGCTCTGCT GTTCCCAATC AAAAGTGAGG AAACTGAGGC
  TGAGAAATGG CCAAGCTCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61098052	NES16608476	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47005020					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61098052	NES16608476	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148795406 () rs orientation: forward

Symbol	Name	Function Class
Gm30575	predicted gene, 30575	within coordinates
Rr587260	regulatory region 587260	1647 bp distal
Rr587261	regulatory region 587261	1049 bp distal
Rr587262	regulatory region 587262	501 bp distal
Rr587263	regulatory region 587263	41 bp proximal