rs47007598 SNP Detail

Summary

• ID
  rs47007598
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:79753749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTATTTTTTA GCTCTGACTC ATGACATATA ATGTATTCCA
  CCAAGTTCAA AGTTTCCCCT TACAAAGAGT TTTATGAAAC AGCTCTTCTT CAGACCAAAT
  T
  TTTTTTTTTT TTTACTTCAA TTATAGTAGC AGATTTTGGA GTTTTAAATC ATTAACAACC
  TCCCAGTGAA CTTGTATCCA CATGGCTTAC AGTCAGAGAG A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145238224	ENSMUSSNP2493135	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47007598					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:79753749 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20619	CpG island 20619	782 bp proximal
Cpgi20620	CpG island 20620	1567 bp proximal
Gm63940	predicted gene, 63940	within coordinates
Rr400985	regulatory region 400985	1186 bp upstream
Rr665783	regulatory region 665783	782 bp distal
Rr665784	regulatory region 665784	827 bp proximal
Rr665785	regulatory region 665785	1488 bp proximal
Tssr2612	transcription start site region 2612	1231 bp upstream
Tssr78123	transcription start site region 78123	849 bp upstream
Tssr78124	transcription start site region 78124	1058 bp upstream
Tssr78125	transcription start site region 78125	1133 bp upstream
Tssr78126	transcription start site region 78126	1197 bp upstream
Tssr78127	transcription start site region 78127	1445 bp upstream
Tssr78128	transcription start site region 78128	1509 bp upstream
Zfp827	zinc finger protein 827	1317 bp upstream