rs47007713 SNP Detail

Summary

• ID
  rs47007713
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:43354400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CTTTTCTTTT CCCTCCACCC CCACCCCAAG TCCCCGAAAG
  TTGGAGAACT GCGAGGGGTT GGTTTCTTAT TTCTCAACTC CGACTCTGCA GTCCGGGAAA
  M
  TAGGAGACGG TCGGTCTTAA CTAACTCGGC GACTGGAGTC TCCCAGTTTT CCGCGCTGAG
  CCCCGTGGCT CTGAGTTGGT GGCATGAGGG TCCCCAAGCG C                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147088003	ENSMUSSNP834679	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47007713					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:43354400 () rs orientation: forward

Symbol	Name	Function Class
Bend3	BEN domain containing 3	730 bp upstream
Cpgi1500	CpG island 1500	within coordinates
Rr224738	regulatory region 224738	within coordinates
Rr384594	regulatory region 384594	27 bp downstream
Tssr93131	transcription start site region 93131	218 bp upstream
Tssr93132	transcription start site region 93132	408 bp upstream
Tssr93133	transcription start site region 93133	737 bp upstream
Tssr93134	transcription start site region 93134	797 bp upstream
Tssr93135	transcription start site region 93135	878 bp upstream
Tssr93136	transcription start site region 93136	940 bp upstream