rs47009813 SNP Detail

Summary

• ID
  rs47009813
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98177554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCATGAGA AGGGTTTTAG
  AACAGGGAAA CCCGGCTGTT TGTTCGATTT CCTTTCCAAT GCCAAGAAAG GTACGATGGG
  GAGACATACC TCACAAATCT CTCTGTCAGC TGGTGGACAA AATTATAAAT TTCAATCCAG
  TTATTTGCTA CACTGCCAGA CCTGAAAAAG GAAGATAAAT TGATCAGAAA GACAAAAAGT
  R
  GGCCTTAATG GCAAACATTT CTTCAGTTTT AAAAGGCGCA TGATGGGGGG TGGAGGTCGG
  GGGTCAGGGA TAGGGGGCGG GGACTGACTC CCCTCTTCAA AGTTAAGTGT GCTTGTTCAT
  GTCCATGTTC AGAGCTGAAA CTTTAGTGTT TGGGCTGAAT CAAGGAAACC AGGAAGACCA
  CACTTCTTGG GGGGGGGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61199552	NES16709290	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs47009813					SNP	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61199552	NES16709290	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98177554 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	within coordinates
Cpgi16083	CpG island 16083	681 bp proximal
Gm42759	predicted gene 42759	955 bp upstream
Rr615101	regulatory region 615101	1738 bp distal
Rr615102	regulatory region 615102	1372 bp distal
Rr615103	regulatory region 615103	1257 bp proximal
Tssr1554	transcription start site region 1554	1257 bp downstream
Tssr47433	transcription start site region 47433	1000 bp upstream
Tssr47434	transcription start site region 47434	1030 bp upstream
Tssr47435	transcription start site region 47435	1400 bp upstream
Tssr47436	transcription start site region 47436	1569 bp upstream
Tssr47437	transcription start site region 47437	1604 bp upstream
Tssr51988	transcription start site region 51988	875 bp downstream
Tssr51989	transcription start site region 51989	922 bp downstream
Tssr51990	transcription start site region 51990	935 bp downstream
Tssr51991	transcription start site region 51991	1032 bp downstream
Tssr51992	transcription start site region 51992	1102 bp downstream
Tssr51993	transcription start site region 51993	1275 bp downstream
Tssr51994	transcription start site region 51994	1299 bp downstream
Tssr51995	transcription start site region 51995	1442 bp downstream
Tssr51996	transcription start site region 51996	1602 bp downstream
Tssr51997	transcription start site region 51997	1640 bp downstream
Tssr51998	transcription start site region 51998	1680 bp downstream
Tssr51999	transcription start site region 51999	1715 bp downstream
Tssr52000	transcription start site region 52000	1736 bp downstream
Tssr52001	transcription start site region 52001	1756 bp downstream
Tssr52002	transcription start site region 52002	1776 bp downstream
Tssr52003	transcription start site region 52003	1818 bp downstream