rs47011539 SNP Detail

Summary

• ID
  rs47011539
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:15728062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GTTTATCCTT GAGCTTTAGT AAAGTTTCTT TTATGAATGT
  GGAATATGTA TCATAGACAT TCAGAATTGA TAGTTCATCT TGGTAGATTT TACCTTTGAT
  G
  AGTATCCCTC CAGTCTCCTG AGAGGTTCTA CCACAGCTTG ACAAATACAG AGGTCAGTGG
  TTGCCCCCAA CCATTAGACT GAGCACAAGT TCCCCAATGG A                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147906245	ENSMUSSNP7139835	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs47011539					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:15728062 () rs orientation: forward

Symbol	Name	Function Class
Gm21190	predicted gene, 21190	1392 bp downstream
Gm21847	predicted gene, 21847	within coordinates
Rr607454	regulatory region 607454	279 bp distal
Rr607455	regulatory region 607455	392 bp distal