rs47011630 SNP Detail

Summary

• ID
  rs47011630
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34573915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGGTAT GCTGGGGCCA
  GCCAGATGGC TCAGTGGAGA AAGGGGCTGA TAAAGGAAGG TGCTTGCTGC CAAGTCTGCC
  CACCTGAGTT CAATCCCTGG GTCTTACACG GTGGAAGGAG AGAATCAATT TCCATAAGTG
  TCCATAAGTA TCCATAAGTA TACTACTGCA TGTGTGTACT CTCACGCATA TAAACACATT
  Y
  AATTATCCAT CAATCAATCA ATGTGAAGGG ATTCCTTTTC TGTTGTGGAA ATGAAACACC
  GTAACCAGAG CAATTTGTAG AAGGCAACAA TTTATTGTGG CTTAAGATTC CAGAGGGATA
  AGAGTCCATC ATTGTGAGGA GCCAGGCAGC AGGTGGCAGA AAACCAGGAA GCTGAGACAC
  CACAGCTTGA AACACACATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss149092889	ENSMUSSNP3170887	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss322575039	CHEV_8_35169815	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47011630					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34573915 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	1354 bp proximal
Dctn6	dynactin 6	within coordinates
Rr400814	regulatory region 400814	1585 bp upstream
Tssr80889	transcription start site region 80889	1001 bp downstream
Tssr80890	transcription start site region 80890	1055 bp downstream
Tssr80891	transcription start site region 80891	1682 bp downstream
Tssr80892	transcription start site region 80892	1750 bp downstream