rs47011687 SNP Detail

Summary

• ID
  rs47011687
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117012091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CCTTGTTTTG CGAGTACAAC CTGCATACAA AGAGAGATTC
  ACAATCAGGG GCTGGGGCAG TTAATGTTTT TTTATTACTG AAATCTTTTT TTAACATTCT
  C
  TAGAAAGCAC CTCTCATTGC AGGAGTTAAG AGATCAGAAT ATGGCAAAGA ATTCTCCAAC
  TACCTCAGGA TCTTTCAGCA AGAACAAATT CAAATACTTC A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss147285219	ENSMUSSNP5784898	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs47011687					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117012091 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	463 bp proximal
Gm22980	predicted gene, 22980	732 bp upstream
Gm26330	predicted gene, 26330	292 bp downstream
Rps8	ribosomal protein S8	Intron
Rr377051	regulatory region 377051	382 bp downstream
Rr398411	regulatory region 398411	1025 bp upstream
Rr598068	regulatory region 598068	1565 bp distal
Rr598069	regulatory region 598069	1339 bp proximal
Snord38a	small nucleolar RNA, C/D box 38A	320 bp upstream
Snord55	small nucleolar RNA, C/D box 55	877 bp downstream
Tssr38607	transcription start site region 38607	1056 bp downstream
Tssr42956	transcription start site region 42956	950 bp downstream
Tssr42957	transcription start site region 42957	1181 bp downstream
Tssr42958	transcription start site region 42958	1228 bp downstream
Tssr42959	transcription start site region 42959	1250 bp downstream
Tssr42960	transcription start site region 42960	1291 bp downstream
Tssr42961	transcription start site region 42961	1305 bp downstream