rs47012779 SNP Detail

Summary

• ID
  rs47012779
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129915600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTGGACT GGGGGGAGGG
  GTGTCAACAA TTTCCTATTT GTTTTTTAGG TCGGCCGGCA AGGTAGCTCA ATAGATCGTT
  TACCACAAAA TGGTAGACAT CTTGGACCCA AGTGATGGAA AGACATAGCT TTAAATTTTC
  GGCCCTCTAC ACACAGCCCG CAATTTTCTT TGTTTCTTTT TCCTTAAAAA AATAAATAAA
  G
  AAAAGAAAAG AAAATCTTTA AAGCCGGCAA TCCCAGCCCT AAGGAAGCGG AGTCAGGAAA
  ATCAAGGAAG GCCAAGCGAG GCCATAAAGT TCAAGGCTAA CCTGAGACTC AAAAACGCAG
  TGAGTAGAAC AAAGAAAATA CAAAAACCAC CCCACCCCCA CCCCTGGCCA AGAGTTTACC
  ACGCATCTTT CTTTCCTCGC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321692406	CHEV_5_130362629	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47012779					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129915600 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	within coordinates
Cpgi16684	CpG island 16684	208 bp proximal
Rr399383	regulatory region 399383	449 bp upstream
Tssr53498	transcription start site region 53498	380 bp downstream
Tssr53499	transcription start site region 53499	529 bp downstream
Tssr53500	transcription start site region 53500	657 bp downstream
Tssr53501	transcription start site region 53501	683 bp downstream