rs47013701 SNP Detail

Summary

• ID
  rs47013701
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:16238995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGTGATA TTAGTGTAGA
  ACAATAACTC CTTTCTTGGG GTGGTGCCAA TTAAAGAACA TTACAATGAG CTATATATTT
  GTAACGTTTT GTAGTGCCGG AAGTGACACT AAATACAATT ACACTTCCTG CTTTTTTTTT
  TCTTCCCCGT TCCCCAGTAA CTAAGTACTA CTTAAAAAAT AAGATCTGTA ATAGCCCTTT
  R
  GGTGAAGATT TATTGTTTCT ATTGATGCTT TCAATGGTTT TCCTGGGATT TTATGTGCCA
  AGGCTGGTTA ATTAGAAATA ATAGTGCTCT GTCCAGAATA ACTTTCTTCA TGCCACACTA
  CATTTTATAT AAGAGTTTAT ATATGCCAGA TACATTGTAG TGTGTTAGTT AACAAACTAT
  TTTAATTAAT GTTTTATTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss134642376	ENSMUSSNP4338930	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs47013701					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16238995 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12993	CpG island 12993			908 bp distal
Gm64384	predicted gene, 64384			1113 bp upstream
Rr397612	regulatory region 397612			1546 bp downstream
Rr573790	regulatory region 573790			1585 bp distal
Rr573791	regulatory region 573791			1124 bp distal
Rr573792	regulatory region 573792			623 bp distal
Tssr833	transcription start site region 833			1213 bp upstream
Tssr28473	transcription start site region 28473			1625 bp downstream
Tssr28474	transcription start site region 28474			1551 bp downstream
Tssr28475	transcription start site region 28475			1523 bp downstream
Tssr28476	transcription start site region 28476			954 bp downstream
Tssr32661	transcription start site region 32661			1144 bp upstream
Tssr32662	transcription start site region 32662			987 bp upstream
Ythdf3	YTH N6-methyladenosine RNA binding protein 3			Intron
				Noncoding-Transcript-Variant