rs47014163 SNP Detail

Summary

• ID
  rs47014163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:79296698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGACCAGA GCATTGTTCA
  AATGGGGCTA TGTGGTGGAA TCACCACGGC CTCTCCAAAA GGAAGGAACC CACTGCAAGA
  GGAAGCCAGA CATTCCACCG CAAACCAACA GAGCGGCTGC GTTTCAGACG CTCAAAGTTC
  CGCTGCTAGA GCTCTGGCTG CTAGGTTTTG TCACACAGTG GGCAGAGGAT CCTATGTCCA
  Y
  GGTTCCTACT TTGTTTTTTG TCTTTTTGTT TTTGTTTTCA GATATAGTTT CTCTACATAG
  ACCTGGCTGT CCAGGGACTT CCTACTGCTT GACAATTTCC ACAGGTGGCC TCCCTTTTTT
  GCTCTTCTGA CCCACAGTTG CAATCATTCT TATCACTCAC CTAGCTGAAG TCACTGCTTT
  AAGTCATGAA CACGCTGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61652837	NES17600562	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	T	C	C	C		C	C	C
ss137913647	ENSMUSSNP4972822	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C						C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47014163					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61652837	NES17600562	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:79296698 () rs orientation: forward

Symbol	Name	Function Class
Rr387481	regulatory region 387481	633 bp downstream
Tssr116835	transcription start site region 116835	155 bp upstream
Zfyve26	zinc finger, FYVE domain containing 26	within coordinates