rs47015263 SNP Detail

Summary

• ID
  rs47015263
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89280740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTTTAT TTATTTATTT
  ATTATTGCAC AAAGACATTT CAGGACCTGA TAACAAAGGG ATCTGCAGGC AAAGGCCCTA
  GCCCAGTGAA GCCAGTATCA TAAGGGGGAG GCAGGCAATA TACCACAATA GCAATGAACT
  AGTAGATGAC TTGTTCATTT ATACCTAGGG GAAAACCCTT TTCTTATGCA TCCCCTGGGG
  M
  TGGTCAGCAC TGAAGGGAAT GACTAGAATA ATGGCTTCCA AGTTGACATA TTAGGGGCAA
  CCTCAGAGAC GAGATGTGGC AGTTGTTTAG AAGATTGGAA TATGATGTTC CCAGTAAAAG
  TGTTAGCAGA GGCAAAAGCC CTGAGATGGA GGTGAGTAAG ACAGGGAAAT GGGGAGAAGC
  AAGTCAGAGG AGACCTCAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61033131	NES16094194	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs47015263					SNP	A	A	A	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61033131	NES16094194	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89280740 () rs orientation: forward

Symbol	Name	Function Class
A230065N10Rik	RIKEN cDNA A230065N10 gene	565 bp downstream
Cpgi19393	CpG island 19393	1079 bp proximal
Me3	malic enzyme 3, NADP(+)-dependent, mitochondrial	752 bp upstream
Rr650822	regulatory region 650822	713 bp proximal
Rr650823	regulatory region 650823	1582 bp proximal
Tssr67672	transcription start site region 67672	873 bp upstream
Tssr67673	transcription start site region 67673	885 bp upstream
Tssr67674	transcription start site region 67674	951 bp upstream
Tssr67675	transcription start site region 67675	967 bp upstream
Tssr67676	transcription start site region 67676	1024 bp upstream
Tssr67677	transcription start site region 67677	1157 bp upstream
Tssr67678	transcription start site region 67678	1343 bp upstream
Tssr67679	transcription start site region 67679	1419 bp upstream
Tssr67680	transcription start site region 67680	1473 bp upstream