rs47015310 SNP Detail

Summary

• ID
  rs47015310
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:59652985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTCACCT CTACTGCATC
  AGGTGCCTGT AGGGAGAGAA CCAGTGATCA ATAGGCTCAG TTCTCCAGGG CCTTAAGAAA
  GGGTGTGGCT GAAATTCCAA CACCGCAGAA ATGACAAGTG CTGTTATCTC CTTAGGTTTG
  TAGCATAATG GGGAGGGGTC TACTGCCCTG TATACGCCAT GCTGCGCCTG CGCACTTCAG
  Y
  ACCTCTGCAG CAGCGGCCAT CTTTACAGAT CCTCACAATG GCGTTTGACA TGCGACACGA
  CCCCTTGATA ATACCAAGAT GACTTTGATA AAATTCAGGA TGCCATGAAA AAATAAAAGA
  CATTGTCTTA TTACCTCTAC TCAATGAGTG GGTAAAAGCA AGTATTGCAT AGACTTCATA
  CACTAACCCC CACTGTGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61014593	NES16116686	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47015310					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61014593	NES16116686	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:59652985 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19176	CpG island 19176	1071 bp proximal
Del(7Ube3a-Snrpn)1Alb	Deletion, Chr 7, Beaudet 1	within coordinates
Gm38393	predicted gene, 38393	Intron
Gm72353	predicted gene, 72353	427 bp upstream
Rr346	regulatory region 346	1803 bp proximal
Rr647544	regulatory region 647544	within coordinates
Rr647545	regulatory region 647545	438 bp proximal
Rr647546	regulatory region 647546	1802 bp proximal
Snrpn	small nuclear ribonucleoprotein N	Intron
Snurf	SNRPN upstream reading frame	Intron
Tssr2280	transcription start site region 2280	1936 bp downstream
Tssr66968	transcription start site region 66968	452 bp upstream
Tssr66969	transcription start site region 66969	1184 bp upstream
Tssr72702	transcription start site region 72702	242 bp upstream
Tssr72703	transcription start site region 72703	147 bp upstream
Tssr72704	transcription start site region 72704	81 bp upstream
Tssr72705	transcription start site region 72705	51 bp upstream
Tssr72706	transcription start site region 72706	729 bp downstream
Tssr72707	transcription start site region 72707	1842 bp downstream
Tssr72708	transcription start site region 72708	1864 bp downstream
Tssr72709	transcription start site region 72709	1915 bp downstream