rs47015634 SNP Detail

Summary

• ID
  rs47015634
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57388620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAGTAGG TCTCATCAGT
  GTTCTCCACC AGCTGATGCA CAGACAGTGT GGCATTGTAG GGCTCCACCA CCGTGTCAGA
  CACCTTGGGT GATGGCACCA CGCTGAACGT ATTCATGATC CTGTCTGGAA ACTCCTCTCG
  GATCTTGCTG ATGAGCAAGG TCCCCATGCC TGAGCCGGTG CCACCTCCGA GCGAGTGGGT
  R
  AGCTGGAAGC CCTGGAGACA GTCGCAGCTT TCCGCCTCTT TGCGCACCAC GTCCAGGACG
  GCATCCACTA ACTCCGCGCC CTCGGTGTAG TGACCCTTGG CCCAGTTGTT GCCTGCTCCG
  GATTGACCTG GGGAAGCGAC AGCGTTGAAT TCGCAGGCAT GGAGAAGGGG TGGACTCTCC
  AACCCATCCA TCTGCACTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62807930	NES17358194	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47015634					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62807930	NES17358194	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57388620 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9393	CpG island 9393	within coordinates
Gm56907	predicted gene, 56907	within coordinates
Rr529268	regulatory region 529268	1337 bp distal
Tssr5182	transcription start site region 5182	1376 bp downstream
Tssr145372	transcription start site region 145372	1335 bp downstream
Tssr145373	transcription start site region 145373	1015 bp downstream
Tssr145374	transcription start site region 145374	899 bp downstream
Tssr148882	transcription start site region 148882	1205 bp upstream
Tssr148883	transcription start site region 148883	1112 bp upstream
Tssr148884	transcription start site region 148884	1043 bp upstream
Tssr148885	transcription start site region 148885	995 bp upstream
Tssr148886	transcription start site region 148886	974 bp upstream
Tssr148887	transcription start site region 148887	958 bp upstream
Tssr148888	transcription start site region 148888	915 bp upstream
Tssr148889	transcription start site region 148889	891 bp upstream
Tssr148890	transcription start site region 148890	790 bp upstream
Tssr148891	transcription start site region 148891	670 bp upstream
Tssr148892	transcription start site region 148892	651 bp upstream
Tssr148893	transcription start site region 148893	438 bp upstream
Tssr148894	transcription start site region 148894	366 bp upstream
Tssr148895	transcription start site region 148895	26 bp downstream
Tssr148896	transcription start site region 148896	88 bp downstream
Tubb4a	tubulin, beta 4A class IVA	within coordinates