rs47015703 SNP Detail

Summary

• ID
  rs47015703
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4268526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGTGTGC CTTATAAGGC
  ATCTTACCCA TAGAGGATGT TAAACCAAGA CCCTGGTCTG TAAGGGATCT CTGAAGTATA
  TGGGCTCATT GAGTTGGCAT TTTGGGCTGT ACAGCCAATA CTCTAGAGAT ACAGGCAGAA
  GGCTCCTGAG TTCCGGGTCC GCCTGGGCTA CTTAAGGTTT ATTGACTCAT CACAGTGCTA
  R
  CTAGATAAAA GAAATGAGTC CAGGAACATC TTCAAAAGTT TCAGAAGGAG GGCTAGCAAG
  CAGCTGGAAT GAGGTCTGCT GGACCTAGAA TTAAGAGCAT TTTCAGGGCT GGCCATGTAG
  CTCAGTTGGC AGAGTATTTC TGTGGCATAC AAAAAGTCCT GGTCTCTATC CTCAGCAACA
  CATAAACCTG GAATGGTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148555724	ENSMUSSNP2706627	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47015703					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4268526 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20046	CpG island 20046	1083 bp distal
Prr36	proline rich 36	1067 bp upstream
Rr658993	regulatory region 658993	724 bp distal
Tssr80256	transcription start site region 80256	1523 bp upstream
Tssr80257	transcription start site region 80257	1483 bp upstream
Tssr80258	transcription start site region 80258	1400 bp upstream
Tssr80259	transcription start site region 80259	1358 bp upstream
Tssr80260	transcription start site region 80260	1274 bp upstream
Tssr80261	transcription start site region 80261	1225 bp upstream
Tssr80262	transcription start site region 80262	1023 bp upstream