rs47015849 SNP Detail

Summary

• ID
  rs47015849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152950070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGCAGGT AAAGACGCCT
  GGTGCCAAGC GTGGCTGCTT GAGTTCAGTC CCCGGAACTC GGAAGGTGGA AGGTAAGATC
  CTAGTCCTCC AAATTGTTCT CTAACCTCTA CACCGCTCTG AGGCTCCAGG GTACTTACAC
  ACATACACGG AAACAATCAA CCAGTCAAAC AATAAACGTA AAATATTACA ATTCTTTAGG
  R
  AATCCAAGGG TATTTGGTCT CTTAGGTAGG GGTCCAAAAT CTCTGGGGAT AGGGTTTAGA
  ATCCTTTGGA CAGGCTCATT ACATCATGGG GGGCTTAAAC GCACTAGTGG GGGAGGGGGA
  CTGGGAATCT TGGGAGGGCG GGTCAAACCT TGGTGTCTGA GTAAGTCCTT CAAGGACTGG
  TTAGCGCCCT TGAGGACAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147984246	ENSMUSSNP1316606	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47015849					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152950070 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	295 bp proximal
Hck	hemopoietic cell kinase	318 bp upstream
Rr567550	regulatory region 567550	112 bp distal
Rr567551	regulatory region 567551	41 bp proximal
Rr567552	regulatory region 567552	357 bp proximal
Rr567553	regulatory region 567553	521 bp proximal
Tssr20863	transcription start site region 20863	477 bp downstream
Tssr20864	transcription start site region 20864	441 bp downstream
Tssr20865	transcription start site region 20865	324 bp upstream
Tssr20866	transcription start site region 20866	339 bp upstream
Tssr26882	transcription start site region 26882	868 bp downstream