rs47016064 SNP Detail

Summary

• ID
  rs47016064
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:64997591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGATTTCT GAGTTCGAGG
  TCAGCATTTC TGAGTTCGAG GTCAGCCTGG TCTACAAAGT GAGTTCCAGG ACAGCCAGGG
  CTATACAGAG AAACCCTGTC TTGAAAAAAA CCAAAAAAAA AAAAAAAAAA AAAAAAAAAA
  AAAGAGTTGC CTTGGTCATG GTATCTCTTC ACAGCAATGA AAATTCTGAC TAGGACAGAA
  R
  TAGAGATATG TTTGTCTAAC TAAAACACAA ATTCATAACA TATAGCTTCC CAAATATTTA
  CTATATAAAA TTCCAAATAT AGTCCGTAGT CAGGAGACTA AAAGACACTG AAACAAGAAA
  CACAATAAAG TAGTTACGAT TTTTACCCTT GTTTAAAAAA AGATGATTCC AGCATCATCT
  GTACTGGAAC TTCATTACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60745012	NES16383954	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47016064					SNP	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60745012	NES16383954	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64997591 () rs orientation: forward

Symbol	Name	Function Class
Cpgi329	CpG island 329	1545 bp distal
Gm51627	predicted gene, 51627	within coordinates
Plekhm3	pleckstrin homology domain containing, family M, member 3	1608 bp upstream
Rr412356	regulatory region 412356	1920 bp distal
Rr412357	regulatory region 412357	1619 bp distal
Rr412358	regulatory region 412358	1666 bp distal
Rr412359	regulatory region 412359	1118 bp distal
Tssr11945	transcription start site region 11945	1707 bp upstream
Tssr11946	transcription start site region 11946	1650 bp upstream
Tssr11947	transcription start site region 11947	1614 bp upstream
Tssr11948	transcription start site region 11948	1597 bp upstream