rs47016109 SNP Detail

Summary

• ID
  rs47016109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127293857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAATAAA ATCTAGCAAA
  ATGACTTTCA TGAGACGAGT TGTCCTCTCT CCTGCCATTT ATTTTCCATT TCCTATGAAT
  CTCCACACGG ATATATCTCC AGCTTTAACA AAAGAGAGCC GAGCTCCATG GTCCGTGCCT
  GGAGTCCCAG CACGGTTAGA CTGAGCCAAG AGCATCCTTG CACAGAGGGA CTAGGGGACA
  R
  GCTGGTTACC ATGAGAAGAC ACAAATGGTC CTGCAACCCA GATGGACAAA TCCTCAGAAA
  TATCACTAAT TATTGATGCT CTTGGGTCCC AAATTTGATC ATCTGTAGAT CTTATTGATT
  TTTACAGTTC AATCATATCT GCATTTTCTC TATTCTTCTC ATTCACACCA CCATCATGGC
  TCAACATTCT AATACACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135865134	ENSMUSSNP751810	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320954700	CHEV_3_127203126	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47016109					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127293857 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	858 bp upstream
Cpgi13791	CpG island 13791	799 bp distal
Rr584800	regulatory region 584800	717 bp distal
Tssr35576	transcription start site region 35576	1170 bp upstream
Tssr35577	transcription start site region 35577	1137 bp upstream
Tssr35578	transcription start site region 35578	1115 bp upstream
Tssr35579	transcription start site region 35579	1071 bp upstream