rs47016962 SNP Detail

Summary

• ID
  rs47016962
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67146074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATCGTTT CCCCTCCCCC
  TTCTCTCTGG TTTCATAGAT ATGTTTGAAA TAGACACTTC AGATGGAAAA GAGCTCCCCT
  GGGAAATCAG AATTCTGGGA GAGATAAAAT GGTCACTAAG AAGTAATTCT GGAAAAACCT
  ATGGGCACAG AGAAATAAGA GATCTTAGGG GAAAACAGAC TTCCCTAATC AGCGGATAGG
  Y
  AGAGTTCCTT CTGTTAACTT TGAGTCTTCT CGCACTGACC GCCACCCCAG GAAGAAGCTG
  GCTCAGCGTC TGCAGGATGC TGAGGAACAT GTAGAAGCTG TGAATTCCAA ATGCGCTTCT
  CTTGAAAAGA CGAAGCAGCG GCTTCAGAAT GAAGTGGAGG ACCTCATGAT TGACGTGGAG
  AGGTCTAACG CTGCCTGCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132326635	ENSMUSSNP5264519	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323719237	CHEV_11_67068750	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47016962					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67146074 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Tssr3528	transcription start site region 3528	505 bp downstream
Tssr3529	transcription start site region 3529	449 bp downstream
Tssr102201	transcription start site region 102201	1730 bp downstream
Tssr102202	transcription start site region 102202	1241 bp downstream
Tssr102203	transcription start site region 102203	1178 bp downstream
Tssr102204	transcription start site region 102204	782 bp downstream
Tssr102205	transcription start site region 102205	565 bp downstream
Tssr102206	transcription start site region 102206	461 bp downstream
Tssr102207	transcription start site region 102207	173 bp upstream
Tssr102208	transcription start site region 102208	343 bp upstream
Tssr102209	transcription start site region 102209	378 bp upstream
Tssr102210	transcription start site region 102210	396 bp upstream
Tssr102211	transcription start site region 102211	406 bp upstream
Tssr102212	transcription start site region 102212	428 bp upstream
Tssr102213	transcription start site region 102213	580 bp upstream
Tssr102214	transcription start site region 102214	936 bp upstream
Tssr102215	transcription start site region 102215	950 bp upstream
Tssr102216	transcription start site region 102216	994 bp upstream
Tssr102217	transcription start site region 102217	1148 bp upstream
Tssr102218	transcription start site region 102218	1859 bp upstream
Tssr102219	transcription start site region 102219	1946 bp upstream
Tssr102220	transcription start site region 102220	1985 bp upstream
Tssr108536	transcription start site region 108536	1194 bp upstream
Tssr108537	transcription start site region 108537	1173 bp upstream
Tssr108538	transcription start site region 108538	663 bp upstream
Tssr108539	transcription start site region 108539	465 bp upstream
Tssr108540	transcription start site region 108540	407 bp upstream
Tssr108541	transcription start site region 108541	187 bp downstream
Tssr108542	transcription start site region 108542	348 bp downstream
Tssr108543	transcription start site region 108543	463 bp downstream
Tssr108544	transcription start site region 108544	1046 bp downstream
Tssr108545	transcription start site region 108545	1978 bp downstream