rs47017792 SNP Detail

Summary

• ID
  rs47017792
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26196067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAACAGCC CCATATCCCC
  ACATCCCCAC ACCTGGGATT AGAGTGAAAT AATATTATTA TATTTCTATG TTTTTTTTTT
  TTTAAGAAAT CAAGATTCCA GAATTCTAAC TACAGTGAAA TGTTGGTGGC AGGGTGCCTA
  GCAAAACATG CTCCTATCCA TCAGTCCCAT GTTACAACAG TCACCCAGTC ACCTGTGTCT
  Y
  CTGTGGTTGT CAGTGCCACA GCAACCCTCA AACTGACAAG CCCTGGCAAC ATGGGAGCCT
  CCCGTAAGAA ATGTACCCCA GGGCTGGTGA GATGGCTCAG TGGATAAGAG CACCCGACTG
  CTCTTCTGAA GGTCCGGAGA GTTCAAATCC CAGCAACCAC ATGGTGGCTC ACAACCATCT
  GTAACAAGAT CTGACGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60255371	NES15700138	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	C	C	C	C	C		C	C	T	C		C
ss325339341	CHEV_17_26114038	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47017792					SNP	T	C	T	T	T	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60255371	NES15700138	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26196067 () rs orientation: forward

Symbol	Name	Function Class
Capn15	calpain 15	within coordinates
Rr329922	regulatory region 329922	1667 bp distal
Rr329923	regulatory region 329923	within coordinates
Rr329924	regulatory region 329924	1534 bp proximal
Rr334464	regulatory region 334464	534 bp proximal