rs47017895 SNP Detail

Summary

• ID
  rs47017895
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:115714725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAAAACAA AACAAAACAA
  TTTCAGACCT CTTTAAGTGC ATGGAGGTCA GTTTTTATAC TCTTCCAGTT ATTATTATTT
  TACTCATTAA ATATTAAAAT ACGTTCATAT TCACAAAGTG GAGTTTATAT TTGCATGCTT
  GCTCTTATTA CCGTTTGGAT AGGTCAAAGA AACTGAACCC CTCAACCCTT CCTTACCTTG
  S
  ATCAATCCGG CACACCTGTT AGCGTCCATC TGCGAGCACT CTTCCTTCTC AGGACCTCTG
  AGAGAAGCTG TGTAACGTAG AAATTTTCGT TAGCTCTCCA CCAGCTGCCA AAATTTGGCT
  GCGGTCCTGC AGTGCAGAGG TGTCGATGCG TCAGGTTGAC AGACGGTAAA TGCTTCTCCA
  GAGGGACAGC AGGAGCCTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62571790	NES17297665	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47017895					SNP	C	C	C	C	C	C	G	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62571790	NES17297665	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:115714725 () rs orientation: forward

Symbol	Name	Function Class
Gpc5	glypican 5	within coordinates
Rr286822	regulatory region 286822	1525 bp distal
Rr294219	regulatory region 294219	1577 bp distal
Rr297879	regulatory region 297879	within coordinates
Tssr130199	transcription start site region 130199	164 bp downstream
Tssr130200	transcription start site region 130200	227 bp downstream
Tssr130201	transcription start site region 130201	272 bp downstream
Tssr130202	transcription start site region 130202	298 bp downstream
Tssr130203	transcription start site region 130203	327 bp downstream