rs47018515 SNP Detail

Summary

• ID
  rs47018515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:81934114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTATCCT CAAGTGAATT
  CAGGTAATGC TCACTTAATT TTTCACCTCC AAAGCATTGT GCAAAGATTT TTAATGTTAG
  CGGTTTTAAG GAAGTTTTGC ACTTTTACTA TAATTTTTAA ATCTGGGTCT TGGGATATAG
  CCAGTTTAAT GGAGGATTTG CCCAGCAACA AGAGGCCCTG GGTTCAATCT AAACACTCAT
  Y
  AGCCAGGCAT TGTGGCACAA GCCTGGAATC CTTCCGTAGT GTTGAGGAAG TGTCGATGTG
  ACTGCTCCCA TCAGCTGCCA GCATAGTGAC CACTGAAGCT GCCAGCACAG CACTGTGGAG
  AGCCTGATGA CAGGCCTCTG GGTTCTGCTT CTTACGGCCA TCCGCACACA AATTTTCCAG
  AATGTTGTGT ATTGGACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133338066	ENSMUSSNP7033326	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47018515					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81934114 () rs orientation: forward

Symbol	Name	Function Class
Gcfc2	GC-rich sequence DNA binding factor 2	within coordinates
Mrpl19	mitochondrial ribosomal protein L19	718 bp downstream
Rr632566	regulatory region 632566	527 bp distal