rs47018567 SNP Detail

Summary

• ID
  rs47018567
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:79767762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATGGTT AGAAGCGATA
  GATTTTATGC ATCAAGAGGA TGCATAAAAT AGCTTCCGGA GACATTTCAA CTAAAAAGTG
  TACCGGAGTG TGGGACCGTG CTTGGGAACA CATGCTTGGT TTTGATGGTG TTGGGGTCTA
  AACTCAGGGC CTTGTGCATG CAATGTTCTC TGTCACTGAG CCGTTTCCTC TCCCCCTGGT
  R
  CTCTGCTGAT AAAAACATGA GTGACGTCTC ACTAGTAAAG ATAGAGGGAG GGGCAGGAGG
  AGCCTGGGCC TCTCATGTTC TCTTTGCTGC TTATTGGCTG TGTCCTTAGG CAGGTCACAT
  TGCTTATGGT CCCAAATTCC TTACCTTTTC AATGAAGTGT GTAGTTCTCA GCTATTCCTA
  GGTGTCTTTT TCAACTCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss139813545	ENSMUSSNP6885725	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs47018567					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79767762 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Elf1	E74 like ETS transcription factor 1			Intron
				Noncoding-Transcript-Variant
Gm9243	predicted gene 9243			422 bp downstream
Rr496131	regulatory region 496131			within coordinates
Rr496132	regulatory region 496132			595 bp distal
Rr496133	regulatory region 496133			1728 bp proximal
Tssr126802	transcription start site region 126802			351 bp upstream
Tssr126803	transcription start site region 126803			370 bp upstream