rs47019960 SNP Detail

Summary

• ID
  rs47019960
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:23293461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAC CTCAGAGCAT CCAAATGGTT
  C
  TTTTGAATGC AGCCAACTAA GAAAA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148843674	ENSMUSSNP2832824	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322527927	CHEV_8_23913917	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47019960					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:23293461 () rs orientation: forward

Symbol	Name	Function Class
Ap3m2	adaptor-related protein complex 3, mu 2 subunit	Intron
Cpgi20156	CpG island 20156	1862 bp proximal
D8Dcr5	DNA Segment, Chr 8, Derry C. Roopenian 5	1331 bp distal
Rr381798	regulatory region 381798	within coordinates
Rr660722	regulatory region 660722	1356 bp distal
Rr660723	regulatory region 660723	1526 bp distal
Rr660724	regulatory region 660724	1570 bp proximal
Tssr80611	transcription start site region 80611	438 bp downstream