rs47022643 SNP Detail

Summary

• ID
  rs47022643
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88200597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGG TGAGAACTGG ATAATGAAGC
  T
  ACAGCTTTAA CCCTGAAAGG CCTGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145439831	ENSMUSSNP4375662	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47022643					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88200597 () rs orientation: forward

Symbol	Name	Function Class
Cbln1	cerebellin 1 precursor protein	1377 bp upstream
Cbln1os	cerebellin 1 precursor protein opposite strand	within coordinates
Cpgi20772	CpG island 20772	263 bp distal
Gm27016	predicted gene, 27016	1320 bp downstream
Rr666962	regulatory region 666962	642 bp distal
Rr666963	regulatory region 666963	1447 bp distal
Rr666964	regulatory region 666964	994 bp distal
Rr666965	regulatory region 666965	908 bp distal
Rr666966	regulatory region 666966	within coordinates
Rr666967	regulatory region 666967	301 bp proximal
Rr666968	regulatory region 666968	1662 bp proximal
Tssr2634	transcription start site region 2634	1440 bp upstream
Tssr78595	transcription start site region 78595	1187 bp downstream
Tssr78596	transcription start site region 78596	1175 bp downstream
Tssr78597	transcription start site region 78597	1147 bp downstream
Tssr78598	transcription start site region 78598	1120 bp downstream
Tssr78599	transcription start site region 78599	1089 bp downstream
Tssr78600	transcription start site region 78600	1075 bp downstream
Tssr78601	transcription start site region 78601	1059 bp downstream
Tssr78602	transcription start site region 78602	806 bp downstream
Tssr78603	transcription start site region 78603	712 bp downstream
Tssr78604	transcription start site region 78604	571 bp downstream
Tssr78605	transcription start site region 78605	551 bp downstream
Tssr82314	transcription start site region 82314	1836 bp upstream
Tssr82315	transcription start site region 82315	1773 bp upstream
Tssr82316	transcription start site region 82316	1708 bp upstream
Tssr82317	transcription start site region 82317	1588 bp upstream
Tssr82318	transcription start site region 82318	1398 bp upstream
Tssr82319	transcription start site region 82319	1372 bp upstream
Tssr82320	transcription start site region 82320	1355 bp upstream
Tssr82321	transcription start site region 82321	1336 bp upstream