rs47023833 SNP Detail

Summary

• ID
  rs47023833
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164904063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGCTGCGT CTTTGGGAGC ACTGAAGAGT CCTGTGCATC
  TGTTCGGATT AGAGGGTTCT GCGTTCTTGC TTTGGTAGAT GGCAGTAAGA CGATGTGACA
  R
  CAGAGTAAAA AAAAAAATAG ACCTCACACT CTGGGGGCTC ACTTTTCTGC TTTGGATTTC
  CACATCAGCT ACAGCCTGCG TCTTGGCTAA CTTTCAACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148234597	ENSMUSSNP6230590	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47023833					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164904063 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd40	CD40 antigen			Intron
				Noncoding-Transcript-Variant
Rr569804	regulatory region 569804			1863 bp distal
Rr569805	regulatory region 569805			within coordinates
Tssr21706	transcription start site region 21706			168 bp upstream
Tssr21707	transcription start site region 21707			1414 bp upstream
Tssr21708	transcription start site region 21708			1993 bp upstream