rs47024209 SNP Detail

Summary

• ID
  rs47024209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96181960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGGCCAG GCCAGCAAGT
  AGAGGCCTCC TAGCCTCCCC AGGACAACCT ACTTGCCAGG GTGCTCACAA TTTTCCCACT
  CGGCAAACAT TTTTCATCAG ATGCCTTGCT TTTATTTCAA TTTATTTTTA CTTTATGTAT
  TTAAATCTAT TTCATTCTAA ATTGGCATGG GCGATCCACA TGAAATTTTT AAATTGAAGG
  R
  AAACCAGTCC CGGCGAGCGA CAGTGAGTTT ACCGGGCTGG GGTGCGTCCG CAGTGAGCCT
  GGCAGCACCG GACGCCAGGG CTTCCTCTGG GCCGTTCGGC CTGCTCCTGA GTACGGCCAA
  CCTGGAACCT TCTGAGGGGC ACACACACAC ACAGGAGGGG GAGGGAGAGA AAAATATGTT
  TTTTTTAAAG GGGATTATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132676618	ENSMUSSNP746113	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47024209					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96181960 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3638	CpG island 3638	1512 bp distal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	1687 bp upstream
Hoxb7	homeobox B7	972 bp downstream
Rr386515	regulatory region 386515	within coordinates
Rr455356	regulatory region 455356	852 bp proximal
Rr455357	regulatory region 455357	1353 bp proximal
Tssr104478	transcription start site region 104478	1019 bp upstream
Tssr104479	transcription start site region 104479	1319 bp upstream
Tssr110325	transcription start site region 110325	1606 bp upstream