rs47024657 SNP Detail

Summary

• ID
  rs47024657
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81008670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACTTACA AAGAATTTCT
  GCAATGTAAT TTTTCTTAGG ACCCTCAATA TATATAATTA CGCTGCATCA AAGTAACTTT
  TATTATGTTT ACTAAATGCT GGTTAAAGCT GTGAGGTCCT GGACTGTCTT ATTGTATTTT
  CATACCCAGA AAATGGAGTC ATGCTTACAG AAAGTATATG TTCAATTCAT TGAACTTATG
  Y
  TTAATTTTTA AAATATTTAC TTATGTATAG CATATACATA AGTAAATGGG TACCTTGGAG
  GCTAGAAGAG GGTGACAGAT GCCCTGGAGC TAAAACAGGT GCCTGTGAGC TACTTATTTT
  GGGTCCTGAG ATCTAATCTG AGTGAATAGG GGACCATCTC TACAGCCTCC TTATGTTAAT
  AAAATGTTAA ATGTTAACGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146075193	ENSMUSSNP6541570	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47024657					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81008670 () rs orientation: forward

Symbol	Name	Function Class
Gm66613	predicted gene, 66613	within coordinates
Map4k3	mitogen-activated protein kinase kinase kinase kinase 3	within coordinates
Rr343206	regulatory region 343206	531 bp proximal
Tssr149503	transcription start site region 149503	462 bp upstream
Tssr149504	transcription start site region 149504	766 bp downstream