rs47024935 SNP Detail

Summary

• ID
  rs47024935
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62020700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTCAGAG GACAACTGGC
  AAAACCTGGC TCTCTCTTCC CATTTGTGTT GCCCTTAACT ACAGAGCATT CTTGCCAGTC
  CAGGTATGTT TTTTGCATAG ATATGCAAAT GTTCATTGCA ATAACAGAAT AAAGTTGTCA
  CTGAATACAG CAACGCATAT CTTTGATCTC ATGGACATCT TTGAAGTTTG AGGCCAGTCA
  R
  GGCTACAAGT CTCTCTTGTC TGTCTGTCTG TCTGTCTCTC AACAAAAAAT GCTAAAAATG
  CCCATTGATT GGTAAATGCA TAAACTAACT ATGGTGTGTT CATACAATGG AACAGAATAC
  AACTTGGCCA CAGAAATGAA TGGCTTTCAA AATAATTATG TTAAATGGTA GTAGCCAGAG
  CCTTAAAGAG ATCTCGTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61279729	NES16893324	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A		A	A		A
ss323330851	CHEV_10_61647669	CHEVERUD	SCREENING_POP	f	SNP									G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs47024935					SNP	A	A	A	A	A	G	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61279729	NES16893324	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62020700 () rs orientation: forward

Symbol	Name	Function Class
Rr215628	regulatory region 215628	1100 bp distal
Rr215629	regulatory region 215629	1701 bp proximal
Rr228219	regulatory region 228219	1046 bp distal
Rr228220	regulatory region 228220	1423 bp proximal
Rr401940	regulatory region 401940	1479 bp downstream
Tspan15	tetraspanin 15	475 bp downstream