rs47025867 SNP Detail

Summary

• ID
  rs47025867
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:23117216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCAG TGTTGACTGT ATGCCCTGCT
  R
  TAGATCCTTA GCTATCATGA TGGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss146216140	ENSMUSSNP6042951	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss325768026	CHEV_19_23214342	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47025867					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23117216 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10683	CpG island 10683	802 bp proximal
Gm56648	predicted gene, 56648	within coordinates
Gm59174	predicted gene, 59174	291 bp upstream
Klf9	Kruppel-like transcription factor 9	1374 bp upstream
Rr405898	regulatory region 405898	748 bp upstream
Rr545290	regulatory region 545290	within coordinates
Rr545291	regulatory region 545291	302 bp proximal
Rr545292	regulatory region 545292	1252 bp proximal
Tssr155578	transcription start site region 155578	255 bp upstream
Tssr155579	transcription start site region 155579	970 bp upstream
Tssr155580	transcription start site region 155580	1088 bp upstream
Tssr155581	transcription start site region 155581	1104 bp upstream
Tssr155582	transcription start site region 155582	1127 bp upstream
Tssr155583	transcription start site region 155583	1167 bp upstream
Tssr155584	transcription start site region 155584	1212 bp upstream
Tssr155585	transcription start site region 155585	1274 bp upstream
Tssr155586	transcription start site region 155586	1331 bp upstream
Tssr155587	transcription start site region 155587	1790 bp upstream
Tssr155588	transcription start site region 155588	1824 bp upstream
Tssr158621	transcription start site region 158621	785 bp downstream
Tssr158622	transcription start site region 158622	1115 bp downstream