rs47026148 SNP Detail

Summary

• ID
  rs47026148
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89924282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGGAGAA AAGGTTGCCA
  TCAGCCACTA TCACAATGTT ACGGTTTTAT CTGACCTGGA ACTCCAATGA GCAATTACCA
  CAAAACAAAA CAAAAACCAA AGCAGAAAAG AGGAACAAGA TTTCTGAGAT CATGCCGACA
  TATATAATGG CTAGTTTTTA GGGTTGTGAA CAATCAAAGC AAGAGCAGAT TCTAAAAGCA
  R
  ATTAAGTCTC CTTTGTCATT GTCACTTCTC ACAAAAGCAG GGCTAATGTA GTCTCTAACA
  GGTAGAGTAA TGAAGACCAG ACCAGATGGG CTCTGTTACC GAAACACACA AACCCAACTA
  AATTCTCACC CCAAATTACC TGCTATGTTG TGTGGTGGTG GTATTTGGAA TCTCCTCCGT
  ATGGCTCAAG CCACTTAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60423018	NES15924697	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47026148					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60423018	NES15924697	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89924282 () rs orientation: forward

Symbol	Name	Function Class
Tssr34182	transcription start site region 34182	144 bp upstream
Tssr34183	transcription start site region 34183	634 bp downstream
Tssr34184	transcription start site region 34184	1467 bp downstream
Ubap2l	ubiquitin-associated protein 2-like	within coordinates