rs47028298 SNP Detail

Summary

• ID
  rs47028298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125432848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTACTTTG AGAATAGTTA CTCCATAGGA TTACCACATA
  CTCTGCTCTG TGCCCCTTTG TACCAGCACT GCCTCATTCT GTACCTAATT CAGTAGATAC
  Y
  GTTTTAAGGT ACATGATGTA CGCTGGCCCA CTGCTTTCCA GGCAAGTCAT GAACACGAGC
  ATCCTGCCAG GGGGTGCAGG AACAGCCTCC ATCCTCTCG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss147482184	ENSMUSSNP5858243	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs47028298					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125432848 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cep152	centrosomal protein 152			Intron
				Noncoding-Transcript-Variant
Gm75597	predicted gene, 75597			649 bp upstream
Rr564236	regulatory region 564236			1607 bp proximal
Tssr19898	transcription start site region 19898			713 bp upstream