rs47029953 SNP Detail

Summary

• ID
  rs47029953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115096966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTTTGAA AAACTTACAA
  TAAGAAAGTT TTATTATCAT AATCAACATT TTAAAATGTA TATTGTTGAA TTGTCTTCCA
  GAGGGCCTAA TACATAAGTA AATCCTCAGT AACCTATATT AGAAAGGCTA CATACAAATA
  AATCAAAGTC CAACCAATCT TGTCTTAAGG TAGCAATTTC CAAATGAGTT TGTGACCTAA
  R
  AAAGCAAATT ATTAGCATCT TCAAAATAAG TGACACAGAC CCAGACACAC AGCAAATGGT
  TGCCTTTAAA ATGAATATCC AAGAAAAGAT AAGAACTGTT CCTATCACAA AGAAGTCTAT
  ATTCAAAAGT TTTCTGTCTT TGTGCTAAAA GAGGCATGTT CAACAAACCT AAGTAAATTT
  CCAGAAAGTC TTTTTAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61227192	NES16842561	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G	A	A	A	A	A		A	A	A	A
ss137005428	ENSMUSSNP2275149	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G										A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47029953					SNP	A	A	G	A	G	A	G	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61227192	NES16842561	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115096966 () rs orientation: forward

Symbol	Name	Function Class
Rr193053	regulatory region 193053	966 bp distal
Stt3b	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	within coordinates