rs47031070 SNP Detail

Summary

• ID
  rs47031070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14066613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTATGTCAC ACTGCAAAAC
  TCCATGTGGA TACAAACTAG CTTAGAGGTG CACGCAGCAG TGAGGAGAGG TGGGATCAGC
  TCCTAAGGCA GGTTCAATGA TGTCAGGTTT TTTTTTTTCA GGACTCAGGA TGCTACTGGG
  CCTGAACTGA TACTGCCTGC CAGCATTGAA TTCAGGGAAA GCTGTAAGTG ATTTTAGATT
  Y
  TATTATTAGT GGATGAGTTC TTGCTCCATT TTCTCCAGGT GACTTGCATA CTTTATGTTC
  ATTTTTTTTT CTTGTTTTAC AGCTGAAGAC TCTTTTTTAT CTGCCATTAT AAACTATACC
  AATAGTTCTA CAGTTCATTT TAAGTTGTCA CCTACATATG TGTTATACAT GGCATGCCGG
  TATGTATTGT CCAGCCAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60543076	NES16555057	PERLEGEN	MM_PANEL2	f	SNP	C		C		C	T		C	T	C
ss145198066	ENSMUSSNP2659867	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47031070					SNP	C	C	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60543076	NES16555057	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14066613 () rs orientation: forward

Symbol	Name	Function Class
Afdn	afadin, adherens junction formation factor	within coordinates
Tssr142714	transcription start site region 142714	258 bp downstream
Tssr142715	transcription start site region 142715	232 bp downstream
Tssr142716	transcription start site region 142716	191 bp downstream
Tssr142717	transcription start site region 142717	168 bp downstream
Tssr142718	transcription start site region 142718	155 bp downstream
Tssr142719	transcription start site region 142719	406 bp upstream