rs47031313 SNP Detail

Summary

• ID
  rs47031313
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:93611590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACCAGGA AAGCAGCTTG
  CTGTCAAGCA CGGTAGCTTG AGATCACTCC CTAGCACTCA GGTGGGGGAG GAAAGAGCTG
  ACTCCCCAAA GCTGTCATCT GACCTCCTAT GTGGGCAACA GTGGGACTCC CCACACACGT
  ATGTGCATGT ACATACATGT ACACATATGT ACAGATGCAA TAAATATAAG CAGAGGAAAA
  Y
  CAAAAATCAA TATGTTCTTT ATATCATCAG TTTCTATTAG ACCATGAATG TCAACTCTGA
  TGTCTGCTTA CAAATTTAGC ACTGAGCTGG CTAGTTTTAT GTCAACTTGT TAAAGTCAAA
  GTCATCTGAG AGGAGGAAAT ACCTTAACAA GATCTAGCTG TAGGTGCTGG AGGCATGGCT
  CAGCGGTTAA GAGCGCTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	NZW/LacJ
ss60510887	NES16531473	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	NZW/LacJ
rs47031313					SNP	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60510887	NES16531473	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93611590 () rs orientation: forward

Symbol	Name	Function Class
Gm30881	predicted gene, 30881	within coordinates
Rr325602	regulatory region 325602	1210 bp proximal
Rr370142	regulatory region 370142	1689 bp upstream
Tssr142206	transcription start site region 142206	1686 bp downstream