rs47031462 SNP Detail

Summary

• ID
  rs47031462
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79990962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCAGCCTG CAGGTGGCAA
  CAGTAGGCTT CCTCGGGAGT GTCAGAGAGG CGCGGACAGA AAAAACCAGG GTAGTGGCCG
  CCTTCTGCAT CCCGTGTAGT CTGGCACAAA TGGGGGTGGT GAGCCAGGGC TGGAGAGAAG
  CAAGACGTCT ATAGAGAAGG GAGGTTACCC ACATCCCCTT CACCCTGCTC AAAGTGCAAA
  R
  TGGGGTCCAA GTCCCAAAGA GAAGAGAAGA GGAGGCTCTC TCCACCCCTC ACCATCAGAT
  CTCCCGTACC CCAAGTCACC CTCAGAGGAT AGGGAAAGTA TTATACCTGA GAGGTCGGTT
  GGCTGGGCAA GATTCATCCA ACTGAAAAGC AGTCCCCCAC ACAGGCCTGT CAGCAGGAGC
  CCTGGACCTC TCCCCTGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61023711	NES16108731	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47031462					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61023711	NES16108731	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79990962 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19331	CpG island 19331	716 bp distal
Cpgi19332	CpG island 19332	1669 bp proximal
Hddc3	HD domain containing 3	1890 bp upstream
Rr400403	regulatory region 400403	813 bp downstream
Rr400404	regulatory region 400404	1729 bp upstream
Rr649870	regulatory region 649870	505 bp distal
Rr649871	regulatory region 649871	846 bp distal
Rr649872	regulatory region 649872	177 bp distal
Rr649873	regulatory region 649873	1409 bp proximal
Rr649874	regulatory region 649874	1853 bp proximal
Tssr67435	transcription start site region 67435	1877 bp upstream
Tssr67436	transcription start site region 67436	1951 bp upstream
Tssr73215	transcription start site region 73215	1204 bp upstream
Tssr73216	transcription start site region 73216	1064 bp upstream
Tssr73217	transcription start site region 73217	1004 bp upstream
Tssr73218	transcription start site region 73218	983 bp upstream
Unc45a	unc-45 myosin chaperone A	214 bp upstream