rs47033473 SNP Detail

Summary

• ID
  rs47033473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108217940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCA GCTTCTCTTT GCTGCATGAA
  Y
  CCACACTGCT ACTCAGTGCC TTAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61449056	NES16829238	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47033473					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61449056	NES16829238	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108217940 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22334	CpG island 22334	566 bp distal
Gm57050	predicted gene, 57050	607 bp upstream
Gpx1	glutathione peroxidase 1	399 bp downstream
Rr383883	regulatory region 383883	923 bp downstream
Rr686785	regulatory region 686785	1455 bp distal
Rr686786	regulatory region 686786	117 bp distal
Rr686787	regulatory region 686787	884 bp proximal
Tssr3010	transcription start site region 3010	991 bp downstream
Tssr87090	transcription start site region 87090	1671 bp downstream
Tssr87091	transcription start site region 87091	1643 bp downstream
Tssr87092	transcription start site region 87092	1509 bp downstream
Tssr87093	transcription start site region 87093	1494 bp downstream
Tssr87094	transcription start site region 87094	1457 bp downstream
Tssr87095	transcription start site region 87095	1442 bp downstream
Tssr87096	transcription start site region 87096	1431 bp downstream
Tssr87097	transcription start site region 87097	821 bp downstream
Tssr87098	transcription start site region 87098	754 bp downstream
Tssr87099	transcription start site region 87099	425 bp downstream
Tssr91519	transcription start site region 91519	848 bp upstream
Tssr91520	transcription start site region 91520	757 bp upstream
Tssr91521	transcription start site region 91521	661 bp upstream
Tssr91522	transcription start site region 91522	585 bp upstream
Tssr91523	transcription start site region 91523	400 bp upstream