rs47033554 SNP Detail

Summary

• ID
  rs47033554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84512829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCAAAGTA CAGACTGTGA
  TTTCAGAAGA CACACAAAAA AGACAACAAT GGAATAAGTC ACAAGGACAG TGAGAGGAAT
  GCCCCTGCCT GCCATGACAC AGACAGGGCA CGCCACCCCC ACTGCCCCAC TGCCTTCTGC
  CGAGTACGCT GCCGACATAA ATTCCTCCTC TCAACCCTTG GATGGAGCTT CAGGAGTCCT
  Y
  GTACCGAGTC TCAATTCTTC AAAATCCTTT TTGCTGCCTA CAACCACAAA GTCACAGAAA
  GCTAGGAACC CGCTGCGTTC TCTACATTAC CCTCCAGCAG TTCCAATCAA AAGCTCTGAA
  ATCATAAAGC ACTGTAACAC CTACTGCATG CTTAGGCAAA TCACTTGCTC CATGTCTGTT
  TCTCCATCAG TGTGTGTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60500103	NES16522419	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs47033554					SNP	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500103	NES16522419	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84512829 () rs orientation: forward

Symbol	Name	Function Class
Mir155	microRNA 155	1737 bp downstream
Mir155hg	Mir155 host gene (non-protein coding)	696 bp downstream
Rr518522	regulatory region 518522	1595 bp distal
Rr518523	regulatory region 518523	233 bp proximal
Tssr139173	transcription start site region 139173	1735 bp downstream
Tssr139174	transcription start site region 139174	953 bp downstream
Tssr139175	transcription start site region 139175	854 bp downstream
Tssr139176	transcription start site region 139176	321 bp downstream