rs47036591 SNP Detail

Summary

• ID
  rs47036591
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:84852354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTCCTCC TCCAGGAATA
  TTTCAGCTGT CAGTCTTAGC ACTCCTTAGC TGAGCCACAT GTACTCAGCC CTTCCTGCCC
  ACTTGGAAGG GGATGCTCCC TGGAGTCTCA GAGGACTTAC TCTGCATCCT GGGCAAAGTC
  AGTGGAGAAC TCTTGGGAAA GCCACGCCCC CCACCCCACC TACAGCAGGC TGCAGGCTTT
  Y
  TCCTCTCACT GGAGGAAAGC CAAAGAACTC AAGCACCCTC CACTCCTACT CAAGGTGACC
  CTCTAGCTAA GAGCACAGCC CTAGAGAGGG CAGGCGAGAG AGCACACATG TGCGCGGAGA
  GCAACGGCAA CAATACCATA CAGTAGTAGC CTTGCTTCTC CTGCCTCAGA CAATGAGCCT
  TTGTGGAAGG CACATTCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61660010	NES17614299	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47036591					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61660010	NES17614299	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84852354 () rs orientation: forward

Symbol	Name	Function Class
Ltbp2	latent transforming growth factor beta binding protein 2	within coordinates
Rr469728	regulatory region 469728	1690 bp distal
Rr469729	regulatory region 469729	within coordinates
Rr469730	regulatory region 469730	1082 bp proximal
Tssr114362	transcription start site region 114362	1445 bp upstream
Tssr114363	transcription start site region 114363	1472 bp upstream
Tssr114364	transcription start site region 114364	1498 bp upstream