rs47036898 SNP Detail

Summary

• ID
  rs47036898
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:20058171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGACCGTGA ACATTCAGAC CTCTCCTGCA GGGGATTCAG
  GTTCCTACAT TGGCAGTCAG TAAGCCTGCC TGCCTGCCCT GCCACCAGCA ATGCCAGACA
  R
  CTCCACTTGA GTCCACGAAC ACAAGGCCTT GCCCTGCACC ACACACACCC ATTAAGTACC
  TTAAGGAACA GAGTCTTAAG GTGGAACCTG TCCTGCACTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52600698	NES15697988	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47036898					SNP	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52600698	NES15697988	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:20058171 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8068	CpG island 8068	1132 bp proximal
Gm41431	predicted gene, 41431	1909 bp downstream
Gm49566	predicted gene, 49566	1236 bp upstream
Map6d1	MAP6 domain containing 1	within coordinates
Tssr140349	transcription start site region 140349	1843 bp downstream
Tssr140350	transcription start site region 140350	1856 bp downstream
Tssr140351	transcription start site region 140351	1883 bp downstream