rs47038557 SNP Detail

Summary

• ID
  rs47038557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85394820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCATGAGGA AACGGAAGCA TGCTGAGTGG AATGGCCCCC
  TTGTTGGTGG CAGGTCTGAG CCCACACCAG TCTGTATTAT AGTCACTCCA CCCTGTCTGC
  Y
  ACAAACTCAT CTGGGTCTGC CTTGAGTCAG TGCCCTGCCC TGATTTTGCC AGCTGCTCAG
  AAACCTCAGT GTGCTCTTGC TACTTGAAGA GCAAGCCACC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
ss60644237	NES16269990	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
rs47038557					SNP	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60644237	NES16269990	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85394820 () rs orientation: forward

Symbol	Name	Function Class
Gm26664	predicted gene, 26664	within coordinates
Gm50464	predicted gene, 50464	within coordinates
Rr666569	regulatory region 666569	within coordinates
Rr666570	regulatory region 666570	1898 bp proximal