rs47039063 SNP Detail

Summary

• ID
  rs47039063
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCACAGTC CTCCACCAAA
  ACTATATTGT TGGGCTCCCC AGCATCCCAG AAGCTGTGAA GGAAAAACAC AGGAGATCTT
  AAATATCAGA AATAGCAGCC TTAACATAGC AAACAACTTA CATATTTGTT ATTTAACTAT
  CATTTTGGGA GATGGAAATT ATAATCTCCA TTTTATCAAT GAGAAAACCC ATTTGCCTAC
  R
  TCATCAGATG GTGGGACATT ACTGGATTTT TATGCTGTTA TGCAGATCTA TAGATTTAAA
  CTCATAAAGG GGCATCATGG TGAGTACTGC TGGCCTGGCA TATGTGCTGC CTCTGTTCTT
  CTACCTTACA CCAATATTAC TTTTACTGCT CTGCCAGAGT TTGTTTTCCT GAGGCATCCT
  TCATGTACAG TAAGCCACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936895	NES16189332	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47039063					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936895	NES16189332	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260803 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	1064 bp downstream
Tssr58809	transcription start site region 58809	427 bp downstream
Tssr58810	transcription start site region 58810	402 bp downstream
Tssr58811	transcription start site region 58811	313 bp downstream
Tssr63020	transcription start site region 63020	1340 bp upstream
Tssr63021	transcription start site region 63021	1262 bp upstream
Tssr63022	transcription start site region 63022	1223 bp upstream
Tssr63023	transcription start site region 63023	1168 bp upstream
Tssr63024	transcription start site region 63024	1070 bp upstream
Tssr63025	transcription start site region 63025	1038 bp upstream
Tssr63026	transcription start site region 63026	1017 bp upstream
Tssr63027	transcription start site region 63027	979 bp upstream
Tssr63028	transcription start site region 63028	954 bp upstream
Tssr63029	transcription start site region 63029	926 bp upstream
Tssr63030	transcription start site region 63030	870 bp upstream
Tssr63031	transcription start site region 63031	840 bp upstream
Tssr63032	transcription start site region 63032	809 bp upstream
Tssr63033	transcription start site region 63033	795 bp upstream
Tssr63034	transcription start site region 63034	769 bp upstream
Tssr63035	transcription start site region 63035	754 bp upstream
Tssr63036	transcription start site region 63036	687 bp upstream
Tssr63037	transcription start site region 63037	654 bp upstream
Tssr63038	transcription start site region 63038	629 bp upstream
Tssr63039	transcription start site region 63039	561 bp upstream
Tssr63040	transcription start site region 63040	517 bp upstream
Tssr63041	transcription start site region 63041	470 bp upstream
Tssr63042	transcription start site region 63042	450 bp upstream
Tssr63043	transcription start site region 63043	433 bp upstream
Tssr63044	transcription start site region 63044	398 bp upstream
Tssr63045	transcription start site region 63045	318 bp upstream
Tssr63046	transcription start site region 63046	305 bp upstream
Tssr63047	transcription start site region 63047	284 bp upstream
Tssr63048	transcription start site region 63048	250 bp upstream
Tssr63049	transcription start site region 63049	226 bp upstream
Tssr63050	transcription start site region 63050	181 bp upstream
Tssr63051	transcription start site region 63051	159 bp upstream
Tssr63052	transcription start site region 63052	1343 bp downstream
Tssr63053	transcription start site region 63053	1453 bp downstream
Tssr63054	transcription start site region 63054	1620 bp downstream
Tssr63055	transcription start site region 63055	1647 bp downstream
Tssr63056	transcription start site region 63056	1688 bp downstream
Tssr63057	transcription start site region 63057	1721 bp downstream