rs47039551 SNP Detail

Summary

• ID
  rs47039551
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:79192792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTGGCT GTAGTTTCTT
  TTTTTTTCTT TTTTTCTAGT TGACTAGGTC TCCTGTGCAT CGTTTTATAA TTATTTCTTA
  ACAGTGCACT GATCAAAAGG TTCATAATTT TTTTTAGCTA AGGTATATCT TTTGAGAAAG
  AATAGTTTTG CTTCTAATAC CCATTTTTAT TGATGATTAA GGTTGGTCTG TTGGCCTTAT
  R
  CTTTGATGTT TCAAGTTAAG ACTTCTCATC TTTGTATTCT TTCCAAGTTC TGCTTTAGAA
  TGAGTTGGGC TCAAGAGGAA AGTTCCTAAC TGTACAGCTT AAATTCGTGA TGAAACCGCA
  TTGGTCATAG CCTAAATCTT TAACCGACCT CTGCAAATGT TAAAATAAAA TGTATGGTTT
  CCCAGCACTC CAGAAGTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss61653316	NES17602453	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A		G	G		G
ss324108061	CHEV_12_80247005	CHEVERUD	SCREENING_POP	f	SNP					A			A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs47039551					SNP	A	A	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61653316	NES17602453	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:79192792 () rs orientation: forward

Symbol	Name	Function Class
Arg2	arginase type II	within coordinates
Gm40462	predicted gene, 40462	within coordinates
Tssr114084	transcription start site region 114084	161 bp downstream