rs47040453 SNP Detail

Summary

• ID
  rs47040453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:70080595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCGGTGAC AGCGCAGAGA
  GCCATGCATG GTAGGTAGCT CCAGCGTGAG TTGCTTTGCA CCACAGCTAG TGACAGCCTG
  GTTCTACTTC AAGACACCTG ACGGTCTTCA CATAACTTCT CCCTCCCTCT TCGACCTCCT
  GGACACCCGC CTTTCCCGCG GAGTTGTCCC AAAGGAAAGC CCTTGGCATC TTATACTCCC
  Y
  ACTGCCAAAG AGTACCAACT TCACAAAGTT CTAGGTTTCT AGTTCGCTTT CCTCTGGGAT
  CTCTGCCCAC GAGTACAGCT CTGGCCAGGA GGCTCCCAGC GACCCAGGGA AGCCAGGGAG
  AGCAGGCGAC CCTTGTATTC AGTTCCACAC AGGCTCCTCG CAAATGCACA CGGTGCTTGG
  CGGGGGGTAT GCGGGAGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss147164735	ENSMUSSNP2352973	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs47040453					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:70080595 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1697	CpG island 1697	within coordinates
Gm66806	predicted gene, 66806	within coordinates
Rr433588	regulatory region 433588	1259 bp distal
Rr433589	regulatory region 433589	within coordinates
Rr433590	regulatory region 433590	391 bp proximal
Rr433591	regulatory region 433591	672 bp proximal
Slc16a9	solute carrier family 16 (monocarboxylic acid transporters), member 9	511 bp upstream
Tssr94008	transcription start site region 94008	318 bp upstream
Tssr94009	transcription start site region 94009	475 bp upstream
Tssr94010	transcription start site region 94010	495 bp upstream
Tssr94011	transcription start site region 94011	1650 bp upstream