rs47041745 SNP Detail

Summary

• ID
  rs47041745
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84657024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TATCTTCTCT GCAACTCCAC TAGTTAATGT TGCACACTGC
  TCCCCGGGAT TCTGATTTCA GGGGTATGAG GTAACGTCTG GGCGCTGAGG TGTTTTTTTT
  K
  TTTTTTTTTT TTTTTTTTTA AAGTGCTCCA GGTGTTTTAA CATGCAAAAT TGACAGGCTC
  CTTTGGGAAA CGTTCTCCTT TCTTCACATA AGATCCGTCT G                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146834920	ENSMUSSNP3387874	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47041745					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84657024 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11868	CpG island 11868	141 bp proximal
Cpgi11869	CpG island 11869	811 bp proximal
Gm75309	predicted gene, 75309	within coordinates
Rr397100	regulatory region 397100	135 bp upstream
Rr560357	regulatory region 560357	within coordinates
Rr560358	regulatory region 560358	146 bp proximal
Rr560359	regulatory region 560359	1949 bp proximal
Timm10	translocase of inner mitochondrial membrane 10	341 bp upstream
Tssr18699	transcription start site region 18699	332 bp upstream
Tssr18700	transcription start site region 18700	399 bp upstream